Technology Development
A cryogenic, coincident fluorescence, electron, and ion beam microscope
eLife
Boltje DB, Hoogenboom JP, Jakobi AJ, Jensen GJ, Jonker CTH, Kaag MJ, Koster AJ, Last MGF, de Agrela Pinto C, Plitzko JM, Raunser S, Tacke S, Wang Z, van der Wee EB, Wepf R, den Hoedt S
Boltje DB, Hoogenboom JP, Jakobi AJ, Jensen GJ, Jonker CTH, Kaag MJ, Koster AJ, Last MGF, de Agrela Pinto C, Plitzko JM, Raunser S, Tacke S, Wang Z, van der Wee EB, Wepf R, den Hoedt S
Subtomogram averaging for biophysical analysis and supramolecular context
Journal of Structural Biology: X
Metskas LA, Wilfong R, Jensen GJ
Metskas LA, Wilfong R, Jensen GJ
Montage electron tomography of vitrified specimens
Journal of Structural Biology
Peck A, Carter SD, Mai H, Chen S, Burt A, Jensen GJ
Peck A, Carter SD, Mai H, Chen S, Burt A, Jensen GJ
UVC inactivation of pathogenic samples suitable for cryo-EM analysis
Communications Biology
Depelteau JS, Renault L, Althof N, Cassidy CK, Mendonça LM, Jensen GJ, Resch GP, Briegel A
Depelteau JS, Renault L, Althof N, Cassidy CK, Mendonça LM, Jensen GJ, Resch GP, Briegel A
Generation of ordered protein assemblies using rigid three-body fusion
PNAS
Vulovic I, Yao Q*, Park Y-J*, Courbet A, Norris A, Busch F, Sahasrabuddhe A, Merten H, Sahtoe DD, Ueda G, Fallas JA, Weaver SJ, Hsia Y, Langan RA, Plückthun A, Wysocki VH, Veesler D, Jensen GJ, Baker D
Vulovic I, Yao Q*, Park Y-J*, Courbet A, Norris A, Busch F, Sahasrabuddhe A, Merten H, Sahtoe DD, Ueda G, Fallas JA, Weaver SJ, Hsia Y, Langan RA, Plückthun A, Wysocki VH, Veesler D, Jensen GJ, Baker D
Challenges in solving structures from radiation-damaged tomograms of protein nanocrystals assessed by simulation
Acta Crystallographica Section D
Peck A, Yao Q, Brewster AS, Zwart PH, Heumann JM, Sauter NK, Jensen GJ
Peck A, Yao Q, Brewster AS, Zwart PH, Heumann JM, Sauter NK, Jensen GJ
Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition
Journal of Structural Biology
Chreifi G, Chen S, Jensen GJ
Chreifi G, Chen S, Jensen GJ
Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics
Journal of Molecular Biology
Jewett AI+, Stelter D, Lambert J, Saladi SM, Roscioni OM, Ricci M, Autin L, Maritan M, Bashusqeh SM, Keyes T, Dame RT, Shea J-E, Jensen GJ, Goodsell DS+
Jewett AI+, Stelter D, Lambert J, Saladi SM, Roscioni OM, Ricci M, Autin L, Maritan M, Bashusqeh SM, Keyes T, Dame RT, Shea J-E, Jensen GJ, Goodsell DS+
DDX-Interface: A factory of interoperable scientific gateways
Gateways 2019 (Conference)
James A, Chacon R, Buddenhagen J, Ortega DR, Rees-Lee P, Jensen G, James DR
James A, Chacon R, Buddenhagen J, Ortega DR, Rees-Lee P, Jensen G, James DR
Qualitative analyses of polishing and precoating FIB milled crystals for MicroED
Structure
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
Regular Architecture (RegArch): A standard expression language for describing protein architectures
bioRxiv
Ortega DR, Jensen GJ
Ortega DR, Jensen GJ
Fusion of DARPin to aldolase enables visualization of small protein by cryoEM
Structure
Yao Q*, Weaver SJ*, Mock J-Y, Jensen GJ
Yao Q*, Weaver SJ*, Mock J-Y, Jensen GJ
ETDB-Caltech: a blockchain-based distributed public database for electron tomography
PLOS One
Ortega DR, Oikonomou CM, Ding HJ, Rees-Lee P, Alexandria, Jensen GJ
Ortega DR, Oikonomou CM, Ding HJ, Rees-Lee P, Alexandria, Jensen GJ
De novo structural pattern mining in cellular electron cryotomograms
Structure
Xu M, Singla J, Tocheva EI, Chang Y-W, Stevens RC, Jensen GJ, Alber F
Xu M, Singla J, Tocheva EI, Chang Y-W, Stevens RC, Jensen GJ, Alber F
Collection of continuous rotation MicroED data from ion beam-milled crystals of any size
Structure
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T
Rapid tilt-series acquisition for electron cryotomography
Journal of Structural Biology
Chreifi G*, Chen S*, Metskas LA, Kaplan M, Jensen GJ
Chreifi G*, Chen S*, Metskas LA, Kaplan M, Jensen GJ
Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells
Journal of Structural Biology
Carter SD*, Mageswaran SK*, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z+, Jensen GJ+
Carter SD*, Mageswaran SK*, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z+, Jensen GJ+
Best practices for managing large cryoEM facilities
Journal of Structural Biology
Alewijnse B, Ashton AW, Chambers MG, Chen S, Cheng A, Ebrahim M, Eng E, Hagen WJH, Koster AJ, Lopez CS, Lukoyanova N, Ortega J, Renault L, Reyntjens S, Rice WJ, Scapin G, Schrijver R, Siebert A, Stagg SM, Grum-Tokars V, Wright ER, Wu S, Yu Z, Zhou ZH, Carragher B, Potter CS
Alewijnse B, Ashton AW, Chambers MG, Chen S, Cheng A, Ebrahim M, Eng E, Hagen WJH, Koster AJ, Lopez CS, Lukoyanova N, Ortega J, Renault L, Reyntjens S, Rice WJ, Scapin G, Schrijver R, Siebert A, Stagg SM, Grum-Tokars V, Wright ER, Wu S, Yu Z, Zhou ZH, Carragher B, Potter CS
Photon-induced near-field electron microscopy (PINEM) of eukaryotic cells
Angewandte Chemie International Edition
Kaplan M, Yoo BK, Tang J+, Karam T, Liao B, Majumdar B, Baltimore D, Jensen G+, Zewail A
Kaplan M, Yoo BK, Tang J+, Karam T, Liao B, Majumdar B, Baltimore D, Jensen G+, Zewail A
Electron cryotomography
Methods in Microbiology
Oikonomou CM, Swulius MT, Briegel A, Beeby M, Yao Q, Chang Y-W, Jensen GJ
Oikonomou CM, Swulius MT, Briegel A, Beeby M, Yao Q, Chang Y-W, Jensen GJ
Coarse-Grained Molecular Dynamics Simulations of the Bacterial Cell Wall
Methods in Molecular Biology
Nguyen LT, Gumbart JC, Jensen GJ
Nguyen LT, Gumbart JC, Jensen GJ
The Caltech Tomography Database and Automatic Processing Pipeline
Journal of Structural Biology
Ding HJ, Oikonomou, CM, Jensen GJ
Ding HJ, Oikonomou, CM, Jensen GJ
Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography
Nature Methods
Chang YW, Chen S, Tocheva EI, Treuner-Lange A, Löbach S, Søgaard-Andersen L, Jensen GJ
Chang YW, Chen S, Tocheva EI, Treuner-Lange A, Löbach S, Søgaard-Andersen L, Jensen GJ
The challenge of determining handedness in electron tomography and the use of DNA origami gold nanoparticle helices as molecular standards
Journal of Structural Biology
Briegel A*, Pilhofer M*, Mastronarde DN, Jensen GJ
Briegel A*, Pilhofer M*, Mastronarde DN, Jensen GJ
Data management challenges in three-dimensional EM
Nature Structural and Molecular Biology
Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mostronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-Garcia E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR+, Kleywegt GJ+
Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mostronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-Garcia E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR+, Kleywegt GJ+